Obtain LOH on an entire chromsomes from samples in a cohort
Usage
lohSpec_tileCalc(window_data, normal)
Arguments
window_data
object of class data frame with columns "chromosome",
"position", "n_vaf", "t_vaf", "sample", "bin", "window_start", "window_stop"
normal
integer specifying the subtraction value from tumor VAF
Value
object of class dataframe containing mean LOH difference calculations
and column names "window_start", "window_stop", "chromosome", "position",
"n_vaf", "t_vaf", "sample", "loh_diff"