GenVisR (version 1.0.4)

lohSpec_tilePosition: Obtain window information

Description

Calculate window positions to perform LOH calculation

Usage

lohSpec_tilePosition(out, window_size)

Arguments

out

object of class dataframe with columns 'chromosome', 'position', 'n_vaf', 't_vaf', and 'sample'

window_size

integer with the size of the sliding window (bp) to be applied

Value

list containing window start/stop positions for each chromosome from each sample to perform LOH calculations