GenVisR (version 1.0.4)

lohView_qual: check input to lohView

Description

Perform a data quality check for inputs to lohView

Usage

lohView_qual(x, y, genome)

Arguments

x

object of class data frame with rows representing germline calls. The data frame must contain columns with the following names "chromosome", "position", "n_vaf", "t_vaf", "sample".

y

a data frame with columns "chrom", "chromStart", "chromEnd", "name", "gieStain"

genome

character string specifying UCSC genome to use

Value

a list of data frames passing quality checks