Usage
lolliplot_buildMain(gene_data, length, mutation_observed, mutation_observed2, fill_value, label_column, plot_text_angle, plot_text_size, point_size, gene_colour, sequence_data, plot_sidechain = FALSE, layers = NULL, paletteA = NULL, paletteB = NULL)
Arguments
gene_data
object of class dataframe giving protien domain and gene
information
length
integer specifying the length of the protien in amino acids
mutation_observed
object of class data frame specifying mutations
observed in input file
mutation_observed2
optional object of class data frame specifying
additional mutations for bottom track
fill_value
character string specifying the column on which to colour
mutation points
label_column
character string specifying the column containing the
labels to attach to mutation points
plot_text_angle
numeric value specifying the angle of text to be
plotted
plot_text_size
numeric value specifying the size of text to be plotted
point_size
numeric value specigying the size of mutation points
gene_colour
color to shade plotted gene
sequence_data
object of class dataframe giving AA sequence, sidechain,
and coord required if plot_sidechain is true
plot_sidechain
boolean specifying whether to plot the AA sidechain
instead of domain information
layers
additional ggplot2 layers to plot
paletteA
Character vector specifying colours for gene features
paletteB
Character vector specifying colours for lolli features