GenVisR (version 1.0.4)

lolliplot_mutationObs: format mutation observations

Description

Create a data frame of mutation observations

Usage

lolliplot_mutationObs(x, track, fill_value, label_column, rep.fact, rep.dist.lmt, attr.fact, adj.max, adj.lmt, iter.max)

Arguments

x

object of class data frame with columns trv_type and amino acid change

track

character string specifying one to 'top', 'bottom' to specify proper track

fill_value

character string giving the name of the column to shade variants on

label_column

character string specifying column containing text information to be plotted

rep.fact

repulsive factor for plotted mutations observed track

rep.dist.lmt

repulsive distance limit for plotted mutations observed track

attr.fact

attraction factor for plotted mutations observed track

adj.max

maximum position change for each iteration observed track

adj.lmt

position adjustment limit which simulation stops observed track

iter.max

maximum iterations beyond which to stop the simulation observed track

Value

object of class data frame giving mutation observations