Usage
waterfall_buildMain(data_frame, grid = TRUE, label_x = FALSE, gene_label_size = 8, file_type = "MGI", drop_mutation = FALSE, plot_x_title = TRUE, plot_label = FALSE, plot_label_size = 4, plot_palette = NULL, layers = NULL, plot_label_angle = 0)
Arguments
data_frame
a data frame in MAF format
grid
boolean value whether to overlay a grid on the plot
label_x
boolean value whether to label the x axis
gene_label_size
numeric value indicating the size of the gene labels
on the y-axis
file_type
character string specifying the file type, one of 'MAF' or
'MGI'
drop_mutation
Boolean specifying whether to drop unused
"mutation type" levels from the legend
plot_x_title
Boolean specifying whether to plot the x_axis title
plot_label
Boolean specifying whether to plot text inside each cell
plot_label_size
Integer specifying text size of cell labels
plot_palette
Character vector specifying colors to fill on mutation
type
layers
additional ggplot2 layers to plot
plot_label_angle
angle at which to plot label text if plot_label is
true