GeneBreak (version 1.2.0)

bpGenes,CopyNumberBreakPointGenes-method: bpGenes

Description

Indentifies genes affected by breakpoint locations.

Usage

"bpGenes"(object)

Arguments

object

An object of class CopyNumberBreakPointGenes

Value

Returns an object of class CopyNumberBreakPointGenes with gene-breakpoint information

Details

This step requires feature-to-gene annotations added to the input object (see ?addGeneAnnotation).

Examples

data( copynumber.data.chr20 )
data( ens.gene.ann.hg18 )

bp <- getBreakpoints( copynumber.data.chr20 )
bp <- bpFilter( bp )
bp <- addGeneAnnotation( bp, ens.gene.ann.hg18 )
bp <- bpGenes( bp )

## options to inspect the data
bp
accessOptions( bp )