arth800: Time Series Expression Data for 800 Arabidopsis Thaliana Genes
Description
This data set describes the temporal expression of 800 genes
of A. thaliana during the diurnal cycle. The 800 genes are
a subset of the data presented in Smith et al. (2004) and were
selected for periodicity according to the method implemented
in the R package GeneCycle (https://cran.r-project.org/package=GeneCycle).
Usage
data(arth800)
Arguments
Format
arth800.expr is a longitudinal
object with repetitions, and contains the log2 transformed expression data.
arth800.mexpr is a longitudinal
object, and contains the mean expression levels of arth800.expr.
arth800.descr, arth800.name, arth800.probe,
arth800.symbol are vectors containing additional information about each gene.
References
Smith et al. 2004. Diurnal changes in the transcriptom encoding
enzymes of starch metabolism provide evidence for both transcriptional
and posttranscriptional regulation of starch metabolism in Arabidopsis
leaves. Plant Physiol. 136: 2687-2699
# NOT RUN {# load GeneNet librarylibrary("GeneNet")
# load data setdata(arth800)
is.longitudinal(arth800.expr)
summary(arth800.expr)
# plot first nine time seriesplot(arth800.expr, 1:9)
# }