exampleProbeLevelSet


This ProbeLevelSet is derived from Human exon ST 1.0 cel files downloaded from the http://www.ncbi.nlm.nih.gov/geo/.
The pData in the ProbeLevelSet is entirely fictional, and the intensity have been changed for some probes to show
a point about correlation to genotype.
  

datasets

A package with focus on analysis of discrete regions of the genome. This package is useful for investigation of one or a few genes using Affymetrix data, since it will extract probe level data using the Affymetrix Power Tools application and wrap these data into a ProbeLevelSet. A ProbeLevelSet directly extends the expressionSet, but includes additional information about the sequence of each probe and the probe set it is derived from. The package includes a number of functions used for plotting these probe level data as a function of location along sequences of mRNA-strands. This can be used for analysis of variable splicing, and is especially well suited for use with exon-array data.

Lasse Folkersen

GeneRegionScan

exampleProbeLevelSet function

A <code><a rd-options="GeneRegionScan:ProbeLevelSet-class" href="/link/ProbeLevelSet?package=GeneRegionScan&version=1.28.0&to=GeneRegionScan%3AProbeLevelSet-class" data-mini-rdoc="GeneRegionScan:ProbeLevelSet-class::ProbeLevelSet">ProbeLevelSet</a></code> object containing probe level intensity data
	for a region on chromosome 2.

Format

This ProbeLevelSet is derived from Human exon ST 1.0 cel files downloaded from the http://www.ncbi.nlm.nih.gov/geo/.
The pData in the ProbeLevelSet is entirely fictional, and the intensity have been changed for some probes to show
a point about correlation to genotype.

exampleProbeLevelSet: Example Dataset of class 'ProbeLevelSet'

Description

Usage

Arguments

Format

Examples