genomic


This is the DNA sequence for fibronectin 1 isoform 2 preproprotein, which is used in the exampleProbeLevelSet.
It has been split up so each exon in the gene is described in one FASTA entry.<p></p><p>
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datasets

A package with focus on analysis of discrete regions of the genome. This package is useful for investigation of one or a few genes using Affymetrix data, since it will extract probe level data using the Affymetrix Power Tools application and wrap these data into a ProbeLevelSet. A ProbeLevelSet directly extends the expressionSet, but includes additional information about the sequence of each probe and the probe set it is derived from. The package includes a number of functions used for plotting these probe level data as a function of location along sequences of mRNA-strands. This can be used for analysis of variable splicing, and is especially well suited for use with exon-array data.

Lasse Folkersen

GeneRegionScan

genomic function

It has been read from FASTA format using the <a rd-options="Biostrings:readDNAStringSet" href="/link/readDNAStringSet?package=GeneRegionScan&version=1.28.0&to=Biostrings%3AreadDNAStringSet" data-mini-rdoc="Biostrings:readDNAStringSet::readDNAStringSet">readDNAStringSet</a> function.
	The FASTA was downloaded from http://genome.ucsc.edu, specifying "One FASTA record per region"
	in the "Sequence Retrieval Region Options".

Format

This is the DNA sequence for fibronectin 1 isoform 2 preproprotein, which is used in the exampleProbeLevelSet.
It has been split up so each exon in the gene is described in one FASTA entry.

genomic: genomic sequence of gene in ProbeLevelSet

Description

Usage

Arguments

Format