Learn R Programming

Gmisc (version 3.0.3)

prTpPlotBoxes: Plot boxes and arrows

Description

Outputs all the boxes and arrow

Usage

prTpPlotBoxes(
  overlap_order,
  transition_flow,
  no_boxes,
  box_width,
  tot_spacing,
  txt,
  cex,
  txt_gpar = NULL,
  prop_start_sizes,
  prop_end_sizes,
  box_prop,
  lwd_prop_total = lwd_prop_total,
  fill_start_clr,
  fill_end_clr,
  txt_start_clr,
  txt_end_clr,
  lwd = 2,
  line_col = "#000000",
  min_lwd,
  max_lwd,
  overlap_add_width,
  overlap_bg_clr,
  type_of_arrow,
  abs_arrow_width,
  arrow_clr,
  transition_arrow_props,
  color_bar_subspace,
  plot_arrows = TRUE,
  proportion = FALSE
)

Value

void

Arguments

overlap_order

The order from first->last for the lines. This means that the last line will be on top while the first one will appear at the bottom. This should be provided as a vector.

transition_flow

This should be a matrix with the size of the transitions. The unit for each cell should be number of observations, row/column-proportions will show incorrect sizes. The matrix needs to be square. The best way to generate this matrix is probably just do a table(starting_state, end_state). The rows represent the starting positions, while the columns the end positions. I.e. the first rows third column is the number of observations that go from the first class to the third class.

no_boxes

Number of boxes to plot

box_width

The width of the box. By default the box is one fourth of the plot width.

tot_spacing

The proportion of the vertical space that is to be left empty. It is then split evenly between the boxes.

txt

The text

cex

The cex gpar of the text

txt_gpar

The [grid::gpar()] object that is overridden with col & cex by other parameters

prop_start_sizes

The proportion of the different boxes to the left

prop_end_sizes

The proportion of the different boxes to the right

box_prop

If you want the boxes to have proportions indicating some other factors then input a matrix with quantiles for the proportions. Note the size must be nrow(transition_flow) x 2.

lwd_prop_total

The width of the lines may be proportional to either the other flows from that box, or they may be related to all flows. This is a boolean parameter that is set to true by default, i.e. relating to all flows.

fill_start_clr

The color of the boxes to the left

fill_end_clr

The color of the boxes to the right

txt_start_clr

The text color of the start boxes. This can either be a single value or a vector if you desire different colors for each box. If you specify box_prop then this has to be a 2 column matrix.

txt_end_clr

The text color of the end boxes. This can either be a single value or a vector if you desire different colors for each box. If you specify box_prop then this has to be a 2 column matrix.

lwd

The line width

line_col

The color of the line

min_lwd

The minimum width of the line that we want to illustrate the tranisition with.

max_lwd

The maximum width of the line that we want to illustrate the tranisition with.

overlap_add_width

The width of the white cross-over line. You can specify this as a scalar multiplication of the current line width. In case of non-grid arrows then you can also have this as a unit which is recommended as it looks better. If the scalar is < 1 then the overlap is ignored.

overlap_bg_clr

In order to enhance the 3D perspective and to make it easier to follow arrows the arrows have a background color to separate them from those underneath.

type_of_arrow

The types of arrow may be grid, simple, or gradient. Simple grid arrows are the bezierGrob arrows (not that pretty), simple is the bezierArrowSmpl that I've created to get a more exact control of the arrow position and width, while gradient corresponds to bezierArrowGradient allowing the arrow to have a fill color that slowly turns into the color of the arrow.

abs_arrow_width

The absolute width of the arrow

arrow_clr

The color of the arrows. Usually black, can be a vector indicating each arrow from first to last arrow (counting from the top). If the vector is of the same length as the boxes then all box arrows will have the same color (that is all the arrows stemming from the left boxes)

transition_arrow_props

The proportions of the different transitions if available.

color_bar_subspace

If there is little or no difference at the low/high proportions of the spectrum then it can be of interest to focus the color change to the center leaving the tails constant

plot_arrows

If we are plotting shadow boxes then arrows should not be plotted and this should be set to FALSE

proportion

It there is a proportion