RangeTrack-class

RangeTrack

[,RangeTrack-method

[,RangeTrack,ANY,ANY-method

chromosome,RangeTrack-method

chromosome

chromosome<-,RangeTrack-method

chromosome<-

isActiveSeq,RangeTrack-method

coerce,RangeTrack,data.frame-method

end,RangeTrack-method

end<-,RangeTrack-method

subset,RangeTrack-method

feature

feature,RangeTrack-method

feature<-

feature<-,RangeTrack,character-method

genome,RangeTrack-method

genome<-,RangeTrack-method

initialize,RangeTrack-method

length,RangeTrack-method

position

range

position,RangeTrack-method

range,RangeTrack-method

ranges,RangeTrack-method

ranges<-,RangeTrack-method

seqnames,RangeTrack-method

seqlevels,RangeTrack-method

seqinfo,RangeTrack-method

split,RangeTrack,ANY-method

split,RangeTrack-method

start,RangeTrack-method

start<-,RangeTrack-method

strand,RangeTrack-method

strand<-,RangeTrack,ANY-method

values,RangeTrack-method

width,RangeTrack-method

width<-,RangeTrack-method

min,RangeTrack-method

max,RangeTrack-method

consolidateTrack,RangeTrack-method

The virtual parent class for all track items in the Gviz
  package that contain some form of genomic ranges.

classes

Genomic data analyses requires integrated visualization of known genomic information and new experimental data.  Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.

Florian Hahne

Gviz

Plotting data and annotation information along genomic coordinates

RangeTrack-class function

A virtual class: No objects may be created from it.

Objects from the class

Class <code>"<links4class>GdObject</links4class>"</code>, directly.

Extends

RangeTrack class and methods

RangeTrack-class: RangeTrack class and methods

Description

Arguments

Objects from the class

Extends

See Also