Hapi (version 0.0.3)

hapiCVMap: Visualization of crossover map

Description

Visualization of crossover map

Usage

hapiCVMap(cv, chr = hg19, step = 5, gap = gap.hg19, x.limits = 6,
  y.breaks = NULL, y.labels = NULL)

Arguments

cv

a dataframe of crossover information

chr

a dataframe of chromosome information, including length, and centrometric regions

step

a numeric value of genomic interval in Mb. Default is 5

gap

a dataframe of unassembled regions with the first column is chromosme, the second column is start position, and third column is the end position of the gap. Default is gap for hg19. If no gap region is provided, use gap=NULL

x.limits

a numeric value of limits on x axis

y.breaks

a vector of positions to show labels on y axis. Default is NULL

y.labels

a vector of labels on the y axis. Default is NULL

Value

a plot of crossover map on all the chromosomes

Examples

# NOT RUN {
data(crossover)
# }
# NOT RUN {
hapiCVMap(cv=crossover)
# }