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Visualization of haplotypes in a single gamete cell
hapiGameteView(hap, chr = hg19, hap.color = c("deepskyblue2", "darkorange2"), centromere.fill = "black", x.breaks = NULL, x.labels = NULL, y.breaks = NULL, y.labels = NULL)
a dataframe of all the phased hetSNPs in all chromosomes
a dataframe of chromosome information, including length, and centrometric regions
a vector of colors for the two haplotypes. Default is c('deepskyblue2','darkorange2')
c('deepskyblue2','darkorange2')
a character of the color for the centromeres. Default is 'black'
'black'
a vector of positions to show labels on x axis. Default is NULL
NULL
a vector of labels on the x axis. Default is NULL
a vector of positions to show labels on y axis. Default is NULL
a vector of labels on the y axis. Default is NULL
a plot of haplotypes in a single gamete cell
# NOT RUN { data(gamete11) # } # NOT RUN { hapiGameteView(hap=gamete11) # }
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