SampleBaseHaplotype

Simulates a base population haplotype.

datagen

Simulate haplotypes through meioses. Allows specification
of population parameters.

Albart Coster

HaploSim

Functions to Simulate Haplotypes

John Bastiaansen

SampleBaseHaplotype function

<dl> <dt>genDist</dt>
<dd>Map size of the simulated genome in Morgan.</dd> <dt>nDec</dt>
<dd>Number of decimals until which marker positions are
 rounded. Partially specifies marker density on the chromosome.</dd> <dt>nLoc</dt>
<dd>Maximal number of snp loci on genome, default is number of
 available positions on genome.</dd><dt>pSnp</dt>
<dd>Optional,if specified the snp positions. Default:
 uniform distribution of loci over the whole genome. Consequence will
 be that loci have allele frequency equal to one. If NULL, positions
 will be randomly sampled for each haplotype and allele frequencies
 will be close to 0, depending on \(nLoc / (genDist*10^{nDec})\).</dd></dl>

Arguments

Simulate a base population haplotype — SampleBaseHaplotype

<dl>

 <dt>genDist</dt>
<dd>Map size of the simulated genome in Morgan.</dd>

 <dt>nDec</dt>
<dd>Number of decimals until which marker positions are
 rounded. Partially specifies marker density on the chromosome.</dd>

 <dt>nLoc</dt>
<dd>Maximal number of snp loci on genome, default is number of
 available positions on genome.</dd>

<dt>pSnp</dt>
<dd>Optional,if specified the snp positions. Default:
 uniform distribution of loci over the whole genome. Consequence will
 be that loci have allele frequency equal to one. If NULL, positions
 will be randomly sampled for each haplotype and allele frequencies
 will be close to 0, depending on \(nLoc / (genDist*10^{nDec})\).</dd>

</dl>

SampleBaseHaplotype: Simulate a base population haplotype

Description

Usage

Value

Arguments

Details

See Also

Examples