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Extract the sequence of snp alleles from a list of objects of class haplotype.
haplotype
getAll(hList,what = c("snp","qtl"),removeHomozygotes = FALSE,translatePos = TRUE)
Matrix.
List of objects of class haplotype.
Specifies if snp or qtl alleles are extracted from haplotype objects.
If TRUE, homozygote genotypes are removed from the marker data.
Translates marker positions to positions in Morgan, else keeps the positions as integers.
Function removes homozygous snp loci before extracting these.
example(AssignQTL) hh <- getAll(hList = hList) qq <- getAll(hList = hList,what = 'qtl')
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