HardyWeinberg (version 1.7.8)

HWLindley: Calculate a posteriori density for Lindley's alpha

Description

Function HWLindley calculates the posterior density for disequilibrium measure alpha, as defined by Lindley (1988).

Usage

HWLindley(alphaseq = seq(-3, 3, by = 0.01), x)

Value

a vector with values of the density for each value in alphaseq

Arguments

alphaseq

a single value or a sequence of values for alpha

x

the genotype count vector in format (AA,AB,BB)

Author

Jan Graffelman

Details

Numerical integration is used to compute the density.

References

Lindley, D.V. (1988) Statistical Inference Concerning Hardy-Weinberg Equilibrium. In: Bernardo, J.M., DeGroot, M.H., Lindley, D.V. and Smith, A.F.M. Bayesian Statistics, 3, pp. 307-326. Oxford University Press.

See Also

HWPosterior

Examples

x <- c(MM=298,MN=489,NN=213)
post.dens <- HWLindley(seq(-1,1,by=0.01),x)
if (FALSE) {
plot(seq(-1,1,by=0.01),post.dens,type="l",xlab=expression(alpha),
     ylab=expression(pi(alpha)))
segments(0,0,0,HWLindley(0,x),lty="dotted",col="red")
}