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HyPhy (version 1.0)

Macroevolutionary phylogentic analysis of species trees and gene trees

Description

A Bay Area high level phylogenetic analysis package mostly using the birth-death process. Analysis of species tree branching times and simulation of species trees under a number of different time variable birth-death processes. Analysis of gene tree species tree reconciliations and simulations of gene trees in species trees.

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Version

Install

install.packages('HyPhy')

Monthly Downloads

18

Version

1.0

License

GPL-2

Last Published

July 30th, 2012

Functions in HyPhy (1.0)

HyPhy-package

Macroevolutionary phylogentic analysis of species trees and gene trees
rgenetree

Samples gene family trees that evolved on a species tree with various conditions.
recon.score

Duplications and losses for gene tree in a species tree
requiprobable

Sample trees from an equiprobable labeled, semi-labeled or unlabeled distribution
Internal R functions

Internal Functions