ids_phased

qibd_phased

ids_unphased

qibd_unphased

trueibd_phased

posvec

These files are example output from the MORGAN IBDhaplo program. There
 is an ids and qibd file produced in each IBDhaplo run. This output is
 from two runs, each on the same original data one of which was
 genotypic (unphased) and one of which was haplotypic (phased). The true
 ibd states of the data are given in trueibd_phased, in terms of
 haplotypic IBD states. There is also the vector posvec which gives the positions of each of the
 2000 SNPs used in the data files. Please refer to the MORGAN IBDhaplo documentation for information on
 how to generate these files and what they contain.

datasets

Functions to analyze, plot, and store the output of running IBD_Haplo software package. More information regarding IBD_Haplo can be found at http://www.stat.washington.edu/thompson/Genepi/pangaea.shtml.

Fiona Grimson

IBDhaploRtools

Functions for the Analysis of IBD Haplo Output

ids_phased function

ids files contain a 4x11 matrix, qibd files contain an 8000x18 matrix.

Format

Source


 These files are example output from the MORGAN IBDhaplo program. There
 is an ids and qibd file produced in each IBDhaplo run. This output is
 from two runs, each on the same original data one of which was
 genotypic (unphased) and one of which was haplotypic (phased). The true
 ibd states of the data are given in trueibd_phased, in terms of
 haplotypic IBD states.

 There is also the vector posvec which gives the positions of each of the
 2000 SNPs used in the data files. 

 Please refer to the MORGAN IBDhaplo documentation for information on
 how to generate these files and what they contain.  

ids_phased: Example MORGAN IBDhaplo output

Description

Usage

Arguments

Format

Source

References