INSPEcT (version 1.2.2)

INSPEcT_diffsteady-class: An S4 class to represent comparisons between two steady-state conditions

Description

INSPEcT_diffsteady is a class able to store the results of the comparisons between two steady states. An object of class INSPEcT_diffsteady is created with the method "compareSteady" applied on two "INSPEcT" objects (see compareSteady).

Usage

synthesis(object)
processing(object)
degradation(object)
"show"(object)
"synthesis"(object)
"processing"(object)
"degradation"(object)

Arguments

object

An object of class INSPEcT_model

Value

Method show for objects of class INSPEcT_model returns the number of the genes that have been modeled

Slots

synthesis

A data.frame which contains both input data and comparisons results regarding synthesis rates

degradation

A data.frame which contains both input data and comparisons results regarding degradation rates

processing

A data.frame which contains both input data and comparisons results regarding processing rates

Details

Methods associated to the class INSPEcT_diffsteady are:

• synthesis: Accessor to the synthesis rates and their comparisons.
• degradation: Accessor to the degradation rates and their comparisons.
• processing: Accessor to the processing rates and their comparisons.
• plotMA: visualization fuction for rates comparisons, see plotMA

Examples

data('simData3rep', package='INSPEcT')
data('simData3rep_2', package='INSPEcT')
diffrates <- compareSteady(simData3rep, simData3rep_2)
head(synthesis(diffrates))
head(processing(diffrates))
head(degradation(diffrates))