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IPDfromKM (version 0.1.10)

Map Digitized Survival Curves Back to Individual Patient Data

Description

An implementation to reconstruct individual patient data from Kaplan-Meier (K-M) survival curves, visualize and assess the accuracy of the reconstruction, then perform secondary analysis on the reconstructed data. We involve a simple function to extract the coordinates form the published K-M curves. The function is developed based on Poisot T. <80><99>s digitize package (2011) . For more complex and tangled together graphs, digitizing software, such as 'DigitizeIt' (for MAC or windows) or 'ScanIt'(for windows) can be used to get the coordinates. Additional information should also be involved to increase the accuracy, like numbers of patients at risk (often reported at 5-10 time points under the x-axis of the K-M graph), total number of patients, and total number of events. The package implements the modified iterative K-M estimation algorithm (modified-iKM) improved upon the approach proposed by Guyot (2012) with some modifications.

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Version

Install

install.packages('IPDfromKM')

Monthly Downloads

600

Version

0.1.10

License

GPL-2

Maintainer

Na Liu

Last Published

November 11th, 2020

Functions in IPDfromKM (0.1.10)

survreport

Survival analysis on the reconstructed IPD
imgexp

A bitmap digital image
preprocess

Preprocess the read-in coordinates
getIPD

Reconstruct individual patient data (IPD) from Scanned Kaplan-Meier(K-M) curves
plot.getKM

Graph and compare the K-M curve from reconstructed IPD with the read-in coordinates
getpoints

Extract the coordinates from Kaplan-Meier(K-M) curves by mouse-clicks
summary.getKM

Print the summary of the IPD estimation
Radiationdata

Two-column coordinates(X,Y) extracted from published Kaplan Meier curves by ScanIt software