fingerprintMat

<p>A binary data set that contains 250 fingerprints for the CMAP MCF7 data.</p>

datasets

Several integrative data methods in which information of objects from different data sources can be combined are included in the IntClust package. As a single data source is limited in its point of view, this provides more insight and the opportunity to investigate how the variables are interconnected. Clustering techniques are to be applied to the combined information. For now, only agglomerative hierarchical clustering is implemented. Further, differential gene expression and pathway analysis can be conducted on the clusters. Plotting functions are available to visualize and compare results of the different methods.

Marijke Van Moerbeke

IntClust

Integrated Data Analysis via Clustering

fingerprintMat function

<p>The format is:
 logi [1:56, 1:250] FALSE FALSE FALSE FALSE FALSE FALSE ...
 - attr(*, "dimnames")=List of 2
  ..$ : chr [1:56] "metformin" "phenformin" "phenyl biguanide" "estradiol" ...
  ..$ : chr [1:250] "-2147375257" "-2147119955" "-2146474760" "-2145840573" ...</p>

fingerprintMat: The fingerprint matrix for the MCF7 data

Description

Usage

Arguments

Format