IntegratedJM (version 1.6)

getCorrUnad: getCorrUnad

Description

The getCorrUnad function is a support function for the function plot1gene.

Usage

getCorrUnad(geneName, fp, fpName, responseVector, dat, resPlot)

Arguments

geneName

Character string, specifying the name of the gene.

fp

Vector containing 0's and 1's - the data about the fingerprint feature.

fpName

Character string, used to make the title of the plots. If not specified, the plot title will be blank.

responseVector

Vector containing the bio-activity data.

dat

Contains the gene expression data matrix for all the genes - can be a matrix or an expression set.

resPlot

Logical. If TRUE, creates the plot data for the residual plot

Value

A list containing the data to create the respective plots and the unadjusted association between the gene expression and bio-activity data.

Details

Works as a support function for plot1gene.

Examples

# NOT RUN {
getCorrUnad(geneName="Gene21",fp=fp,fpName="Fingerprint",
responseVector=activity,dat=gene_eset,resPlot=TRUE)
# }