paste_linpred

Construct a linear predictor from parameter names and indices, the name of
the data matrix and corresponding columns, and apply scaling to the data
if necessary.

internal

Joint analysis and imputation of incomplete data in the Bayesian
framework, using (generalized) linear (mixed) models and extensions there of,
survival models, or joint models for longitudinal and survival data, as
described in Erler, Rizopoulos and Lesaffre (2021) <doi:10.18637/jss.v100.i20>.
Incomplete covariates, if present, are automatically imputed.
The package performs some preprocessing of the data and creates a 'JAGS'
model, which will then automatically be passed to 'JAGS'
<https://mcmc-jags.sourceforge.io/> with the help of
the package 'rjags'.

Nicole Erler

JointAI

Joint Analysis and Imputation of Incomplete Data

Nicole S. Erler

paste_linpred function

<dl><dt>parname</dt>
<dd>character string; name fo the parameter (e.g., "beta")</dd>
<dt>parelmts</dt>
<dd>integer vector; indices of the parameter vector to be used;
should have the same length as <code>cols</code></dd>
<dt>matnam</dt>
<dd>character string; name of the data matrix</dd>
<dt>index</dt>
<dd>character string; name of the index (e.g., "i" or "ii")</dd>
<dt>cols</dt>
<dd>integer vector; indices of the columns of <code>matname</code>, should have
the same length as <code>parlemts</code></dd>
<dt>scale_pars</dt>
<dd>matrix with row names according to the column names of
<code>matname</code> and columns "center" and "scale"; or NULL</dd>
<dt>isgk</dt>
<dd>logical; is this linear predictor within the Gauss-Kronrod
quadrature?</dd></dl>

Arguments

Write a linear predictor — paste_linpred

<dl>

<dt>parname</dt>
<dd>character string; name fo the parameter (e.g., "beta")</dd>


<dt>parelmts</dt>
<dd>integer vector; indices of the parameter vector to be used;
should have the same length as <code>cols</code></dd>


<dt>matnam</dt>
<dd>character string; name of the data matrix</dd>


<dt>index</dt>
<dd>character string; name of the index (e.g., "i" or "ii")</dd>


<dt>cols</dt>
<dd>integer vector; indices of the columns of <code>matname</code>, should have
the same length as <code>parlemts</code></dd>


<dt>scale_pars</dt>
<dd>matrix with row names according to the column names of
<code>matname</code> and columns "center" and "scale"; or NULL</dd>


<dt>isgk</dt>
<dd>logical; is this linear predictor within the Gauss-Kronrod
quadrature?</dd>

</dl>

paste_linpred: Write a linear predictor

Description

Usage

Arguments