aal116coordinates

Automated Anatomical Labeling (AAL): The AAL atlas distributed with the AAL Toolbox was fractionated to functional
resolution (3x3x3 mm3) using nearest-neighbor interpolation.
This data is available at <a href="http://preprocessed-connectomes-project.org/abide/Pipelines.html">http://preprocessed-connectomes-project.org/abide/Pipelines.html</a> as part of ABIDE-preprocessed dataset.
It can be directly downloaded at <a href="https://fcp-indi.s3.amazonaws.com/data/Projects/ABIDE_Initiative/Resources/aal_roi_atlas.nii.gz">https://fcp-indi.s3.amazonaws.com/data/Projects/ABIDE_Initiative/Resources/aal_roi_atlas.nii.gz</a>

datasets

An end-to-end package for learning multiple sparse Gaussian graphical models and nonparanormal models from Heterogeneous Data with Additional Knowledge. It is able to simulate multiple related graphs as well as produce samples drawn from them. Multiple state-of-the-art sparse Gaussian graphical model estimators are included to both multiple and difference estimation. Graph visualization is available in 2D as well as 3D, designed specifically for brain. Moreover, a set of evaluation metrics are integrated for easy exploration with model validity. Finally, classification using graphical model is achieved with Quadratic Discriminant Analysis. The package comes with multiple demos with datasets from various fields. Methods references: SIMULE (Wang B et al. (2017) <doi:10.1007/s10994-017-5635-7>), WSIMULE (Singh C et al. (2017) <arXiv:1709.04090v2>), DIFFEE (Wang B et al. (2018) <arXiv:1710.11223>), JEEK (Wang B et al. (2018) <arXiv:1806.00548>), JGL(Danaher P et al. (2012) <arXiv:1111.0324>) and kdiffnet (Sekhon A et al, preprint for publication).

Arshdeep Sekhon

JointNets

End-to-End Sparse Gaussian Graphical Model Simulation,
Estimation, Visualization, Evaluation and Application

Zhaoyang Wang

Beilun Wang

Yanjun Qi

aal116coordinates function

116 observations (Brain Region Names) of 7 variables (name, x.mni, y.mni, z.mni, lobe, hemi, index)

Format

Automated Anatomical Labeling (AAL): The AAL atlas distributed with the AAL Toolbox was fractionated to functional
resolution (3x3x3 mm3) using nearest-neighbor interpolation.
This data is available at <a href='http://preprocessed-connectomes-project.org/abide/Pipelines.html'>http://preprocessed-connectomes-project.org/abide/Pipelines.html</a> as part of ABIDE-preprocessed dataset.
It can be directly downloaded at <a href='https://fcp-indi.s3.amazonaws.com/data/Projects/ABIDE_Initiative/Resources/aal_roi_atlas.nii.gz'>https://fcp-indi.s3.amazonaws.com/data/Projects/ABIDE_Initiative/Resources/aal_roi_atlas.nii.gz</a>

aal116coordinates: AAL116 brain atlas coordinates in MNI space

Description

Usage

Arguments

Format

References