KEGGGroup-class

getComponent

getComponent,KEGGGroup-method

 Class to represent 'group' nodes in KEGG pathways

classes

KEGGGraph is an interface between KEGG pathway and graph
object as well as a collection of tools to analyze, dissect and
visualize these graphs. It parses the regularly updated KGML
(KEGG XML) files into graph models maintaining all essential
pathway attributes. The package offers functionalities
including parsing, graph operation, visualization and etc.

Jitao David Zhang

KEGGgraph

KEGGgraph: A graph approach to KEGG PATHWAY in R and
Bioconductor

KEGGGroup-class function

The objects are usually created by <code><a rd-options="" href="/link/parseEntry?package=KEGGgraph&version=1.30.0" data-mini-rdoc="KEGGgraph::parseEntry">parseEntry</a></code> function
  and is not intended to be called directly by users.

Objects from the Class

<dl>
	   <dt><code>component</code>:</dt><dd> Component of the group </dd> <dt><code>entryID</code>:</dt><dd> see the slot of
	      <code><a rd-options="" href="/link/KEGGNode-class?package=KEGGgraph&version=1.30.0" data-mini-rdoc="KEGGgraph::KEGGNode-class">KEGGNode-class</a></code> </dd> <dt><code>graphics</code>:</dt><dd> see the slot of
	      <code><a rd-options="" href="/link/KEGGNode-class?package=KEGGgraph&version=1.30.0" data-mini-rdoc="KEGGgraph::KEGGNode-class">KEGGNode-class</a></code></dd> <dt><code>link</code>:</dt><dd> see the slot of
	      <code><a rd-options="" href="/link/KEGGNode-class?package=KEGGgraph&version=1.30.0" data-mini-rdoc="KEGGgraph::KEGGNode-class">KEGGNode-class</a></code></dd> <dt><code>map</code>:</dt><dd> see the slot of
	      <code><a rd-options="" href="/link/KEGGNode-class?package=KEGGgraph&version=1.30.0" data-mini-rdoc="KEGGgraph::KEGGNode-class">KEGGNode-class</a></code></dd> <dt><code>name</code>:</dt><dd> see the slot of
	      <code><a rd-options="" href="/link/KEGGNode-class?package=KEGGgraph&version=1.30.0" data-mini-rdoc="KEGGgraph::KEGGNode-class">KEGGNode-class</a></code></dd> <dt><code>reaction</code>:</dt><dd> see the slot of
	      <code><a rd-options="" href="/link/KEGGNode-class?package=KEGGgraph&version=1.30.0" data-mini-rdoc="KEGGgraph::KEGGNode-class">KEGGNode-class</a></code></dd> <dt><code>type</code>:</dt><dd> see the slot of <code><a rd-options="" href="/link/KEGGNode-class?package=KEGGgraph&version=1.30.0" data-mini-rdoc="KEGGgraph::KEGGNode-class">KEGGNode-class</a></code></dd> </dl> 

Slots

Extends

<dl>
    <dt>getComponent</dt><dd><code>signature(object = "KEGGNode")</code>: returns
      components of the group, in a vector of strings</dd> </dl> 

Methods

Class to represent 'group' nodes in KEGG pathways

KEGGGroup-class: Class "KEGGGroup"

Description

Arguments

Objects from the Class

Slots

Extends

Methods

See Also

Examples