KEGGgraph (version 1.30.0)

getType-methods: Get type attribute

Description

This method can be used to extract generic type attribute from several objects implemented in KEGGgraph package.

The meanings and descriptions of the types can be found at KGML manual listed in the reference.

Methods

object = "KEGGEdge"

An object of KEGGEdge-class

object = "KEGGNode"

An object of KEGGNode-class

object = "KEGGReaction"

An object of KEGGReaction-class

References

KGML Manual http://www.genome.jp/kegg/docs/xml/

Examples

mapfile <- system.file("extdata/map00260.xml", package="KEGGgraph")
maptest <- parseKGML(mapfile)

## node type
node <- nodes(maptest)[[3]]
getType(node)

## edge type
edge <- edges(maptest)[[5]]
getType(edge)

## reaction type
reaction <- getReactions(maptest)[[5]]
getType(reaction)