KEGGprofile

Introduction

KEGGprofile combined the KEGG pathway map with expression profiles of genes in that pathway and facilitated more detailed analysis about the specific function changes inner pathway or temporal correlations in different genes and samples. KEGGprofile also supports to display compound and gene expression data at the same time.

Download and install

You can install KEGGprofile package in R from Bioconductor by following R codes:

source("http://bioconductor.org/biocLite.R")
biocLite("KEGGprofile")

Document

KEGGprofile has a vignette in Bioconductor to demonstrate its application on high-throughput expression data.

Web interface

KEGGprofile has a web interface at CQS website. It allows users without R background to perform KEGG database based analysis and visualization easily.