LDlinkR (version 1.1.2)

LDproxy: Explore proxy and putative functional variants for a single query variant.

Description

Explore proxy and putative functional variants for a single query variant.

Usage

LDproxy(snp, pop = "CEU", r2d = "r2", token = NULL, file = FALSE)

Arguments

snp

an rsID or chromosome coordinate (e.g. "chr7:24966446"), one per query

pop

a 1000 Genomes Project population, (e.g. YRI or CEU), multiple allowed, default = "CEU"

r2d

either "r2" for LD R2 or "d" for LD D', default = "r2"

token

LDlink provided user token, default = NULL, register for token at https://ldlink.nci.nih.gov/?tab=apiaccess

file

Optional character string naming a path and file for saving results. If file = FALSE, no file will be generated, default = FALSE.

Value

a data frame

Examples

# NOT RUN {
LDproxy("rs456", "YRI", "r2", token = Sys.getenv("LDLINK_TOKEN"))
# }
# NOT RUN {
# }