LEA-package


LEA is an R package dedicated to landscape genomics and ecological association 
tests. LEA can run analyses of population structure and genome scans for local 
adaptation. It includes statistical methods for estimating ancestry 
coefficients from large genotypic matrices and evaluating the number of 
ancestral populations (snmf, pca); and identifying genetic polymorphisms that 
exhibit high correlation with some environmental gradient or with the variables
used as proxies for ecological pressures (lfmm). LEA is mainly based on 
optimized C programs that can scale with the dimension of very large data sets.


 package

LEA is an R package dedicated to landscape genomics and
ecological association tests. LEA can run analyses of
population structure and genome scans for local adaptation. It
includes statistical methods for estimating ancestry
coefficients from large genotypic matrices and evaluating the
number of ancestral populations (snmf, pca); and identifying
genetic polymorphisms that exhibit high correlation with some
environmental gradient or with the variables used as proxies
for ecological pressures (lfmm), and controlling the false
discovery rate. LEA is mainly based on optimized C programs
that can scale with the dimension of very large data sets.

LEA-package: LEA: an R package for Landscape and Ecological Associations studies.

Description

Arguments

Details