Arguments
data
A data matrix for which the rows are genes and the columns are experiments, sorted by their pseudotime.
max_lag_prop
The largest proportion of your experiments that you want the size of the lag to be. Recommended not to go beyond 1/3. Default value is 1/3.
MAC_cutoff
The lowest MAC desired to be shown in results. Default value is 0.2.
file_name
The name to be used for resulting .csv files. I.e., using file_name="mine" would create the file "MAC_mine.csv" and "lag_mine.csv"
lag_matrix
Logical. TRUE indicates that the resulting matrix of lags should be saved to a csv. Default value is TRUE.
symmetric
Logical. TRUE indicates that a symmetric matrix is required for output MAC .csv file. Results in the absolute maximum value for each pair (i,j) and (j,i). Default value is FALSE.