LOLA (version 1.2.2)

checkUniverseAppropriateness: Check universe appropriateness

Description

Checks to see if the universe is appropriate for the userSets Anything in the userSets should be present in the universe. In addition, 2 different regions in the userSets should not overlap the same region in the universe

Usage

checkUniverseAppropriateness(userSets, userUniverse, cores = 1, fast = FALSE)

Arguments

userSets

Regions of interest

userUniverse

Regions tested for inclusion in userSets

cores

Number of processors

fast

Skip the (slow) test for many-to-many relationships

Value

No return value.

Examples

data("sample_input", package="LOLA") # load userSet
data("sample_universe", package="LOLA") # load userUniverse
checkUniverseAppropriateness(userSets, userUniverse)