loadRegionDB

folder where your regionDB is stored, or list of such folders

dbLocation

uses simpleCache to cache and load the results

useCache

You can limit the number of regions for testing.
Default: NULL (no limit)

limit

Restrict the database loading to this list of collections

collections


Helper function to annotate and load a regionDB, a folder with
subfolder collections of regions.


Provides functions for testing overlap of sets of genomic regions with public
and custom region set (genomic ranges) databases.
This make is possible to do automated enrichment analysis for genomic region sets,
thus facilitating interpretation of functional genomics and epigenomics data.

Nathan Sheffield

LOLA

Location overlap analysis for enrichment of genomic ranges

loadRegionDB function

Helper function to annotate and load a regionDB, a folder with
subfolder collections of regions.

loadRegionDB: Helper function to annotate and load a regionDB, a folder with subfolder collections of regions.

Description

Usage

Arguments

Value

Examples