readCollectionFiles

dbLocation

collection

should I recreate the sizes files
documenting how many regions (lines) are in each region set?

refreshSizes


Given a database and a collection, this will create the region annotation
data.table; either giving a generic table based on file names, or by
reading in the annotation data.


Provides functions for testing overlap of sets of genomic regions with public
and custom region set (genomic ranges) databases.
This make is possible to do automated enrichment analysis for genomic region sets,
thus facilitating interpretation of functional genomics and epigenomics data.

Nathan Sheffield

LOLA

Location overlap analysis for enrichment of genomic ranges

readCollectionFiles function

Given a database and a collection, this will create the region annotation
data.table; either giving a generic table based on file names, or by
reading in the annotation data.

readCollectionFiles: Given a database and a collection, this will create the region annotation data.table; either giving a generic table based on file names, or by reading in the annotation data.

Description

Usage

Arguments

Value

Examples