readRegionSetAnnotation

dbLocation

Restrict the database loading to this list of collections
Leave NULL to load the entire database (Default).

collections

refreshCaches

Use simpleCache to store results and load them?

useCache


Given a folder containing region collections in subfolders, this function
will either read the annotation file if one exists, or create a generic
annotation file.


Provides functions for testing overlap of sets of genomic regions with public
and custom region set (genomic ranges) databases.
This make is possible to do automated enrichment analysis for genomic region sets,
thus facilitating interpretation of functional genomics and epigenomics data.

Nathan Sheffield

LOLA

Location overlap analysis for enrichment of genomic ranges

readRegionSetAnnotation function

Given a folder containing region collections in subfolders, this function
will either read the annotation file if one exists, or create a generic
annotation file.

readRegionSetAnnotation: Given a folder containing region collections in subfolders, this function will either read the annotation file if one exists, or create a generic annotation file.

Description

Usage

Arguments

Value

Examples