splitFileIntoCollection

filename

factor column that groups the lines in the file by set

splitCol


This function will take a single large bed file that is annotated
with a column grouping different sets of similar regions,
and split it into separate files for use with the LOLA collection format.


Provides functions for testing overlap of sets of genomic regions with public
and custom region set (genomic ranges) databases.
This make is possible to do automated enrichment analysis for genomic region sets,
thus facilitating interpretation of functional genomics and epigenomics data.

Nathan Sheffield

LOLA

Location overlap analysis for enrichment of genomic ranges

splitFileIntoCollection function

This function will take a single large bed file that is annotated
with a column grouping different sets of similar regions,
and split it into separate files for use with the LOLA collection format.

splitFileIntoCollection: This function will take a single large bed file that is annotated with a column grouping different sets of similar regions, and split it into separate files for use with the LOLA collection format.

Description

Usage

Arguments

Value

Examples