temp.kalman

Smoothes a temperature time series uses a Kalman filter/ smoother.

A collection of tools for the calculation of freewater metabolism
from in situ time series of dissolved oxygen, water temperature, and,
optionally, additional environmental variables. LakeMetabolizer implements
5 different metabolism models with diverse statistical underpinnings:
bookkeeping, ordinary least squares, maximum likelihood, Kalman filter,
and Bayesian. Each of these 5 metabolism models can be combined with
1 of 7 models for computing the coefficient of gas exchange across the
air–water interface (k). LakeMetabolizer also features a variety of
supporting functions that compute conversions and implement calculations
commonly applied to raw data prior to estimating metabolism (e.g., oxygen
saturation and optical conversion models).

Jake Zwart

LakeMetabolizer

Tools for the Analysis of Ecosystem Metabolism

Luke Winslow

Ryan Batt

Jessica Corman

Hilary Dugan

Paul Hanson

Aline Jaimes

Jordan Read

Richard Woolway

temp.kalman function

<dl><dt>wtr</dt>
<dd>Vector (regular time series) of water temperature in degrees C</dd>
<dt>watts</dt>
<dd>estimate of watts entering the layer at each time step, from watts.in</dd>
<dt>ampH</dt>
<dd>factor by which to artificially amplify the observation error variance, H</dd>
<dt>...</dt>
<dd>parameters to be passed to <a href="/link/optim?package=LakeMetabolizer&version=1.5.5" data-mini-rdoc="LakeMetabolizer::optim">optim</a></dd></dl>

Arguments

Author

Smooth temperature time series using a Kalman filter/ smoother — temp.kalman

<dl>

<dt>wtr</dt>
<dd>Vector (regular time series) of water temperature in degrees C</dd>


<dt>watts</dt>
<dd>estimate of watts entering the layer at each time step, from watts.in</dd>


<dt>ampH</dt>
<dd>factor by which to artificially amplify the observation error variance, H</dd>


<dt>...</dt>
<dd>parameters to be passed to <a href='https://rdrr.io/r/stats/optim.html'>optim</a></dd>

</dl>

Smooth temperature time series using a Kalman filter/ smoother

temp.kalman: Smooth temperature time series using a Kalman filter/ smoother

Description

Usage

Value

Arguments

Author

Details

References

See Also