Learn R Programming

LncPath (version 1.1)

getExampleData: Get the example data

Description

Get the example data of LncPath package for litte trials.

Usage

getExampleData(ExampleData)

Arguments

ExampleData

A character, should be one of "SigLncs", "ExampleNet", "Labels", "Profile", "Result" and "Table".

Details

The function getExampleData(ExampleData = "SigLncs") obtains a vector of lncRNAs confirmed to be related with breast cancer. The function getExampleData(ExampleData = "Profile") obtains the expression profile as a data frame. The function getExampleData(ExampleData = "Labels") obtains a vector of 0/1s describing the class of samples in the expression profile. The function getExampleData(ExampleData = "Result") obtains a lncPath object come from the lncPath function. The function getExampleData(ExampleData = "Table") obtains a data frame as the summary of lncPath object. The function getExampleData(ExampleData = "ExampleNet") obtains a data frame as the edges of lncRNA-mRNA interaction net.

References

Subramanian, A., Tamayo, P., Mootha, V.K., Mukherjee, S., Ebert, B.L., Gillette, M.A., Paulovich, A., Pomeroy, S.L., Golub, T.R., Lander, E.S. et al. (2005) Gene set enrichment analysis: a knowledgebased approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A, 102, 15545-15550.