LncPath (version 1.1)

lncPath2Table: Simplify the lncPath object into table

Description

Simplify the LncPath object into a data frame, which discribes the detail imformation of each pathway.

Usage

lncPath2Table(Result)

Arguments

Result

The lncPath object come from the lncPath function.

Value

A data frame, rows are pathways and columns are details of each pathway.

Details

The lncPath object come from the lncPath function may be too complicated for user to view. This function can simplify it into a data frame. Each row of the data frame describe the detail of one pathway, including informations of pathway name, number of genes in the pathway, enrichment scores, normalized enrichment scores, p value and false discovery rate.

References

Subramanian, A., Tamayo, P., Mootha, V.K., Mukherjee, S., Ebert, B.L., Gillette, M.A., Paulovich, A., Pomeroy, S.L., Golub, T.R., Lander, E.S. et al. (2005) Gene set enrichment analysis: a knowledgebased approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A, 102, 15545-15550.

Examples

# NOT RUN {
##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
Result <- getExampleData("Result")
Table <- lncPath2Table(Result)
head(Table)

# }