LncPriCNet (version 1.0)

getCoExpGeneofLncs: Get Co-expressed Genes of LncRNAs

Description

Get co-expressed genes of one or some lncRNAs based on the multi-omics network.

Usage

getCoExpGeneofLncs(lncRNAs, GLNet, scoreCutoff = 0.6)

Arguments

lncRNAs

A character or a character vector. The names of lncRNAs.

GLNet

An adjacency matrix of the gene-lncRNA network with colnames representing lncRNAs and rownames representing genes. The value represents co-expression relation and it ranges from 0 to 1.

scoreCutoff

A numeric donotes if the co-expression scores between genes and lncRNAs above this value, the genes would be retained. A value ranges from 0 to 1. The default value is 0.6.

Value

A vector of gene names.

See Also

getTopDiseaseLncRNAs

Examples

## Not run: 
# #############    getCoExpGeneofLncs   ################
# ##breast cancer 
# data("GLNetExample")
# diseaseInf<-getDiseaseInf("114480")
# lncRNA<-diseaseInf$LncRNAs[1]
# genes<-getCoExpGeneofLncs(lncRNA, GLNet=GLNetExample, scoreCutoff = 0.6) 
# print(genes[1:5])
# 
# ## End(Not run)