BLOSUM62


A substitution matrix used for sequence alignment of proteins.
In LowMACA, it is used to calculate the trident conservation score.


datasets

The LowMACA package is a simple suite of tools to investigate and analyze the mutation profile of several proteins or pfam domains via consensus alignment. You can conduct an hypothesis driven exploratory analysis using our package simply providing a set of genes or pfam domains of your interest.

Stefano de Pretis

LowMACA

LowMACA - Low frequency Mutation Analysis via Consensus Alignment

BLOSUM62 function

A squared numeric matrix with aminoacids as rownames and colnames

Format

<a href="http://www.uky.edu/Classes/BIO/520/BIO520WWW/blosum62.htm">BLOSUM62 from NCBI</a>

Source

A substitution matrix used for sequence alignment of proteins.
In LowMACA, it is used to calculate the trident conservation score.

BLOSUM62: BLOSUM62 matrix

Description

Usage

Arguments

Format

Source

Examples