- [
signature(x = "AbstractMassObject", i = "numeric")
:
Extracts a range of an AbstractMassObject
object
and returns a new one.
- as.matrix
signature(x = "AbstractMassObject")
:
Converts an AbstractMassObject
object to a
matrix with 2 columns (mass
, intensity
).
- coordinates
signature(object = "AbstractMassObject")
:
Accessor function for coordinates stored in object generated from imaging
mass spectrometry data.
- coordinates<-
signature(object = "AbstractMassObject",
value = "numeric|matrix")
Replacement function for coordinates used in imaging mass spectrometry
datasets.
- intensity
signature(object = "AbstractMassObject")
:
Accessor function for slot intensity
.
- intensity<-
signature(object = "AbstractMassObject",
value = "numeric")
Replacement function for slot intensity
.
- isEmpty
signature(object = "AbstractMassObject")
:
Returns TRUE
if length of intensity
is 0 or all
intensity
values are 0.
- length
signature(x = "AbstractMassObject")
:
Returns length of slot intensity
.
- lines
signature(x = "AbstractMassObject")
:
Extented function for adding AbstractMassObject
object as a
line to a specific plot.
See lines
for details.
- mass
signature(object = "AbstractMassObject")
:
Accessor function for slot mass
.
- mass<-
signature(object = "AbstractMassObject",
value = "numeric")
Replacement function for slot mass
.
- mz
signature(object = "AbstractMassObject")
:
Accessor function for slot mass
.
- mz<-
signature(object = "AbstractMassObject",
value = "numeric")
Replacement function for slot mass
.
- metaData
signature(object = "AbstractMassObject")
:
Accessor function for slot metaData
.
- metaData<-
signature(object = "AbstractMassObject")
:
Replacement function for slot metaData
.
- plot
signature(x = "AbstractMassObject", y = "missing")
:
Extented function for plotting an AbstractMassObject
object.
See plot,AbstractMassObject,missing-method
for
details.
- points
signature(x = "AbstractMassObject")
:
Extented function for adding
AbstractMassObject
object as points
to a specific plot.
See points
for details.
- trim
signature(object = "AbstractMassObject",
range = "numeric")
: Trim an AbstractMassObject
object. See trim,AbstractMassObject,numeric-method
for details.
- transformIntensity
signature(object = "AbstractMassObject")
:
Transforms the intensities of an AbstractMassObject
object.
See transformIntensity,AbstractMassObject-method
for details.