MAMA (version 2.2.1)

plotES: Function to do plots in combination of effect size method

Description

Function plots several characteristics examined in meta-analysis with combination effect size method.

Usage

plotES(theScores,ScoresFDR,num.studies, legend.names, colors, which)

Arguments

theScores

Output from function zScores

ScoresFDR

Output from function zScoreFDR

num.studies

number of studies involved in meta-analysis

legend.names

vector of names of studies, the first one should be "Combined Set"

colors

vector of colors used in plots, its length must be 1 + number of studies

which

subset from 1,2,3: 1 for plot of the fraction of the genes that have a higher effect size than the threshold for the combined Z-score, but not for any of the data set specific Z-scores, 2 for plot of the number of genes and the corresponding FDR for the two sided situation and 3 for plot of the number of genes that are below a given threshold for the FDR

See Also

zScores, zScoreFDR