prunePed

Creates a subset of a pedigree by retaining the ancestors of a specified subset 
of individuals

manip

Fits Multivariate Generalised Linear Mixed Models (and related models) using Markov chain Monte Carlo techniques (Hadfield 2010 J. Stat. Soft.).

Jarrod Hadfield

MCMCglmm

MCMC Generalised Linear Mixed Models

prunePed function

<dl> <dt>pedigree</dt>
<dd>pedigree with id in column 1 dam in column 2 and sire in 
column 3</dd> <dt>keep</dt>
<dd>individuals in pedigree for which the ancestors should be 
retained</dd> <dt>make.base</dt>
<dd>logical: should ancestors that do not provide additional information be discarded?</dd>
 
</dl>

Arguments

Jarrod Hadfield <a href="/link/j.hadfield%40ed.ac.uk?package=MCMCglmm&version=2.36" data-mini-rdoc="MCMCglmm::j.hadfield@ed.ac.uk">j.hadfield@ed.ac.uk</a> + Michael Morrissey

Author

Pedigree pruning — prunePed

<dl>

 <dt>pedigree</dt>
<dd>pedigree with id in column 1 dam in column 2 and sire in 
column 3</dd>

 <dt>keep</dt>
<dd>individuals in pedigree for which the ancestors should be 
retained</dd>

 <dt>make.base</dt>
<dd>logical: should ancestors that do not provide additional information be discarded?</dd>
 
</dl>

Jarrod Hadfield <a href='mailto:j.hadfield@ed.ac.uk'>j.hadfield@ed.ac.uk</a> + Michael Morrissey

prunePed: Pedigree pruning

Description

Usage

Value

Arguments

Author