prior of MCMC file from MCMCtree analysis using data=0
MCMCPosterior
posterior of MCMC file from MCMCtree analysis using data
inputTree
phylogeny in MCMCtree format used in MCMCtree analysis
return.density
Logical. Whether to return the density or original values for the effective prior and posterior.
rootCalibration
= NULL If NULL, then behaves as by default. Alternatively, if a user has specified a root prior in the MCMCtreeR control file it can be added here as a vector in the form it would appear tree.
Value
list containing node estimates for each distribution