MOFA (version 1.3.1)

getDefaultDataOptions: Get default data options

Description

Function to obtain the default data options.

Usage

getDefaultDataOptions()

Value

Returns a list with the default data options, which have to be passed as an argument to prepareMOFA

Details

The data options are the following:

• scaleViews: logical indicating whether to scale views to have the same unit variance. As long as the scale differences between the data sets is not too high, this is not required. Default is FALSE.

• removeIncompleteSamples: logical indicating whether to remove samples that are not profiled in all omics. We recommend this only for testing, as the model can cope with samples having missing assays. Default is FALSE.

Examples

# NOT RUN {
DataOptions <- getDefaultDataOptions()
DataOptions
# }