MOFA (version 1.3.1)

runMOFA: train a MOFA model

Description

Function to train an untrained MOFAmodel object.

Usage

runMOFA(object, outfile = NULL)

Arguments

object

an untrained MOFAmodel object

outfile

output .hdf5 file

Value

a trained MOFAmodel object

Details

In this step the R package is calling the mofapy Python package, where the the training is performed. The interface with Python is done with the reticulate package. If you have several versions of Python installed and Rstudio is not detecting the correct one, you can change it using reticulate::use_python.

Examples

# NOT RUN {
data <- makeExampleData()
# create and prepare the MOFAmodel
MOFAobject <- createMOFAobject(data)
MOFAobject <- prepareMOFA(MOFAobject)
# fit the model (takes some time)
# }
# NOT RUN {
# MOFAobject <- runMOFA(MOFAobject)
# MOFAobject
# }