CNAobjectToCGHcallObject

Output object of segment function from DNAcopy package

CNAobject

convert CNA object (output of the function segment from DNAcopy package) into a list for the argument segmentData of the function <a rd-options="" href="/link/callingProcess?package=MPAgenomics&version=1.2.3" data-mini-rdoc="MPAgenomics::callingProcess">callingProcess</a>.

Preprocessing and analysis of genomic data. 'MPAgenomics'
provides wrappers from commonly used packages to streamline their repeated
manipulation, offering an easy-to-use pipeline. The segmentation of
successive multiple profiles is performed with an automatic choice of
parameters involved in the wrapped packages. Considering multiple profiles
in the same time, 'MPAgenomics' wraps efficient penalized regression methods
to select relevant markers associated with a given outcome.
Grimonprez et al. (2014) <doi:10.1186/s12859-014-0394-y>.

Samuel Blanck

MPAgenomics

Multi-Patient Analysis of Genomic Markers

Quentin Grimonprez

Sjoerd Vosse

Mark van de Wiel

Pierre Neuvial

Henrik Bengtsson

Ilari Scheinin

Guillemette Marot

Inria 

CNAobjectToCGHcallObject function

convert CNA object (output of the function segment from DNAcopy package) into a list for the argument segmentData of the function <a rd-options='' href='callingProcess'>callingProcess</a>.

Convert CNAobject — CNAobjectToCGHcallObject

Convert CNAobject

CNAobjectToCGHcallObject: Convert CNAobject

Description

Usage

Arguments

Value

See Also