callingObject

A matrix containing the copy-number signal. Each column is a different patient.

copynumber

A matrix containing the segmented copy-number signal. Matrix of the same size as copynumber.

segmented

Chromosome associated with the copy-number signal.

chromosome

position

Names of the probes (not necessary).

featureNames

Name of the sample (not necessary).

sampleNames

create the list of parameters for <a rd-options="" href="/link/callingProcess?package=MPAgenomics&version=1.2.3" data-mini-rdoc="MPAgenomics::callingProcess">callingProcess</a> function

Preprocessing and analysis of genomic data. 'MPAgenomics'
provides wrappers from commonly used packages to streamline their repeated
manipulation, offering an easy-to-use pipeline. The segmentation of
successive multiple profiles is performed with an automatic choice of
parameters involved in the wrapped packages. Considering multiple profiles
in the same time, 'MPAgenomics' wraps efficient penalized regression methods
to select relevant markers associated with a given outcome.
Grimonprez et al. (2014) <doi:10.1186/s12859-014-0394-y>.

Samuel Blanck

MPAgenomics

Multi-Patient Analysis of Genomic Markers

Quentin Grimonprez

Sjoerd Vosse

Mark van de Wiel

Pierre Neuvial

Henrik Bengtsson

Ilari Scheinin

Guillemette Marot

Inria 

callingObject function

create the list of parameters for <a rd-options='' href='callingProcess'>callingProcess</a> function

Create the list of parameters for <a rd-options='' href='callingProcess'>callingProcess</a> function — callingObject

Create the list of parameters for <a rd-options='' href='callingProcess'>callingProcess</a> function

Create the list of parameters for <a rd-options="" href="/link/callingProcess?package=MPAgenomics&version=1.2.3" data-mini-rdoc="MPAgenomics::callingProcess">callingProcess</a> function

callingObject: Create the list of parameters for callingProcess function

Description

Usage

Arguments

Value