MPAgenomics (version 1.2.3)

createArchitecture: Create aroma architecture and copy files

Description

Create the architecture required by aroma.* packages and copy files into created folders.

Usage

createArchitecture(
  dataSetName,
  chipType,
  dataSetPath,
  chipFilesPath,
  path = ".",
  verbose = FALSE,
  tags = NULL
)

Arguments

dataSetName

The name of the data-set folder to create

chipType

The name of the used chip

dataSetPath

Path to the folder containing the data CEL files

chipFilesPath

Path to the folder containing the chip files

path

Path where the architecture should be created (default=".")

verbose

Print information during the process (default=FALSE)

tags

Common tag which appears in the different file names (cdf, ugp, ufl) of the chip. For no tag, use tags=NULL (default = NULL). See details for more information.

Value

No return value, called for side effects.

Details

All the cdf chip file names must follow the following rule : <chipType>,<Tags>.cdf

Multiples tags must be separated by a comma. If there is no tag, the pattern is <chipType>.cdf

See Also

copyChipFiles, copyDataFiles, createAromaArchitecture

Examples

# NOT RUN {
#DO NOT EXECUTE before reading the vignette
  createArchitecture("test1","GenomeWideSNP_6","./celPATH","./chipPATH",path=".",TRUE,"Full")
# }
# NOT RUN {
# }